“When facing “scientific” arguments for God like these, ask yourself three questions. First, what’s more likely: that these are puzzles only because we refuse to see God as an answer, or simply because science hasn’t yet provided a naturalistic answer? In other words, is the religious explanation so compelling that we can tell scientists to stop working on the evolution and mechanics of consciousness, or on the origin of life, because there can never be a naturalistic explanation? Given the remarkable ability of science to solve problems once considered intractable, and the number of scientific phenomena that weren’t even known a hundred years ago, it’s probably more judicious to admit ignorance than to tout divinity.
Second, if invoking God seems more appealing than admitting scientific ignorance, ask yourself if religious explanations do anything more than rationalize our ignorance. That is, does the God hypothesis provide independent and novel predictions or clarify things once seen as puzzling—as truly scientific hypotheses do? Or are religious explanations simply stop-gaps that lead nowhere?…Does invoking God to explain the fine-tuning of the universe explain anything else about the universe? If not, then that brand of natural theology isn’t really science, but special pleading.
Finally, even if you attribute scientifically unexplained phenomena to God, ask yourself if the explanation gives evidence for your God—the God who undergirds your religion and your morality. If we do find evidence for, say, a supernatural origin of morality, can it be ascribed to the Christian God, or to Allah, Brahma, or any one god among the thousands worshipped on Earth? I’ve never seen advocates of natural theology address this question.”

Source: Faith vs. Fact (2015), pp. 156-157